Package index
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aggregate_geneSet() - Aggregate Gene Set Scores
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aggregate_geneSetList() - Aggregate Gene Set List in Parallel
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aggregate_geneSetList_matching_coexp() - Aggregate Gene Set List with Matching Coexpression in Parallel
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ask_user_continue() - Prompt User to Continue with Yes/No Input
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brainenrich() - Perform Brain Gene Set Analysis
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brainscore.lm_test() - Perform Brain Score Linear Model Test
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brainscore() - Calculate Brain Scores for Gene Sets
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brainscore.simulate() - Perform Brain Score Simulation
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brain_data - Brain Data PC1 for Left Hemisphere
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calculate_pvals() - Calculate P-Values
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coord_dk_lh - Desikan Centroid Coordinates for Left Hemisphere
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corr_brain_gene() - Calculate correlations or associations between gene and brain data
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filter_geneSetList() - Filter Gene Set List
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find_core_genes() - Find Core Genes Influencing Aggregated Score or LM Coefficients between molecular profile and behavioral data
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generate_null_brain_data() - Generate Null Brain Data
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get_annoData() - Load gene sets annotation data
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get_geneExp() - Get Gene Expression Data
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get_geneSetList() - Get Gene Set List
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get_termDescription() - Get Gene Set Descriptions
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identify_core_genes() - Identify core genes based on a specified threshold method
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job_cat() - Combine Results from Saved RDS Files
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job_splitter() - Distribute and Process Iterations Across HPC Jobs
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perm_id_dk_lh_5000 - Permutation index for left Desikan regions (5000 permutations)
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resample_gene() - Resample Gene List
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resample_geneSetList_matching_coexp() - Resample Gene Sets with Specified Constraints
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rotate_parcellation() - Rotate Parcellation
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sample_df - Simulated data from HCP data
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sample_gs_matching_coexp() - Sample Gene Sets Matching Co-Expression
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simple_lm() - Perform Linear Regression with Multiple Predictors and Covariates
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split_Anno() - Split Annotation Data
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swap_geneList() - Swap Gene List