Skip to contents

Introduction

This tutorial demonstrates how to perform an enrichment analysis of derived group-level statistics using the BrainEnrich package. We will use effect size maps of Bipolar Disorders (BD) and gene expression data to identify significant gene sets.

1. Prepare Data for the Analysis

1.1. Load brain_data (effect size maps of Bipolar Disorders)

We will load brain data that contains the effect size maps of Bipolar Disorders. This data includes case-control comparisons of regional cortical thickness.

# Load brain data from the package
data(brain_data)
# Display the structure of the brain data
str(brain_data)
#> 'data.frame':    34 obs. of  1 variable:
#>  $ MDD: num  -0.058 -0.042 -0.014 0.047 -0.041 -0.117 -0.063 -0.049 -0.104 -0.023 ...

Show effect size map for BD

Visualize the effect size map to understand the regional differences in cortical thickness.

First, we define a plot function (this is not included in the package as it is not a core function).

#' Plot Brain Data
#'
#' This function creates a brain plot using the ggplot2 and ggseg packages.
#'
#' df2plot A data frame containing the data to plot.
#' ats A character string indicating the atlas to use ('dx', 'dk', 'aseg').
#' what2plot A character string indicating the variable to plot ('statistic').
#' filterby A character string indicating the filter to apply ('p.value', 'p.adj', 'none').
#' title2show A character string indicating the title of the plot.
#' limit2show A numeric vector of length 2 indicating the limits for the color scale.
#' legend2show A character string indicating the legend title.
#' hide_legend A logical value indicating whether to hide the legend.
#' hem A character string indicating which hemisphere to plot ('both', 'left', 'right').
#' low A character string indicating the color for the low end of the scale.
#' mid A character string indicating the color for the midpoint of the scale.
#' high A character string indicating the color for the high end of the scale.
#' sufix2remove A character string indicating the suffix to remove from labels.
#' return A ggplot2 object.

plot_brain <- function(df2plot,
                       ats = c("dx", "dk", "aseg"),
                       what2plot = "statistic",
                       filterby = c("p.value", "p.adj", "none"),
                       title2show = "",
                       limit2show = c(-15, 15),
                       legend2show = "Stat",
                       hide_legend = FALSE,
                       hem = "both",
                       low = "steelblue1",
                       mid = "white",
                       high = "firebrick1",
                       sufix2remove = "_thickavg") {
  # Match arguments with allowed values
  ats <- match.arg(ats)
  filterby <- match.arg(filterby)

  # Apply filters based on p-values
  if (filterby == "p.value") {
    df2plot <- df2plot %>% filter(.data$p.value < 0.05)
  } else if (filterby == "p.adj") {
    df2plot <- df2plot %>% filter(.data$p.adj < 0.05)
  } else if (filterby == "none") {
    df2plot <- df2plot
  }

  # Modify labels and join data based on anatomical terms
  if (ats == "dx" || ats == "dk") {
    atlas <- ifelse(ats == "dx", "desterieux", "dk")
    atlas_data <- getExportedValue("ggseg", atlas)
    df2plot <- df2plot %>%
      mutate(
        label = sub(".*L_", "lh_", .data$label),
        label = sub(".*R_", "rh_", .data$label),
        label = sub(sufix2remove, "", .data$label)
      ) %>%
      brain_join(atlas_data) %>%
      reposition_brain(as.formula(". ~ hemi + side"))
  } else if (ats == "aseg") {
    atlas_data <- getExportedValue("ggseg", "aseg") # ggseg::aseg
    df2plot <- df2plot %>%
      mutate(
        label = sub("SV_L_", "Left-", .data$label), # Replace "SV_L_" with "Left-"
        label = sub("SV_R_", "Right-", .data$label), # Replace "SV_R_" with "Right-"
        label = sub("thal", "Thalamus-Proper", .data$label), # Replace "thal" with "Thalamus-Proper"
        label = sub("caud", "Caudate", .data$label), # Replace "caud" with "Caudate"
        label = sub("put", "Putamen", .data$label), # Replace "put" with "Putamen"
        label = sub("pal", "Pallidum", .data$label), # Replace "pal" with "Pallidum"
        label = sub("hippo", "Hippocampus", .data$label), # Replace "hippo" with "Hippocampus"
        label = sub("amyg", "Amygdala", .data$label), # Replace "amyg" with "Amygdala"
        label = sub("accumb", "Accumben-area", .data$label), # Replace "accumb" with "Accumben-area"
        label = sub("LatVent", "Lateral-Ventricle", .data$label) # Replace "LatVent" with "Lateral-Ventricle"
      ) %>%
      filter(!grepl("Accumben-area", .data$label)) %>%
      brain_join(atlas_data) %>%
      filter(.data$side == "coronal")
  }

  # Apply conditional filtering based on hemisphere
  if (hem %in% c("left", "right")) {
    df2plot <- df2plot %>% filter(.data$hemi == hem)
  }

  # Construct the plot
  p <- df2plot %>%
    ggplot() +
    geom_sf(aes(fill = .data[[what2plot]])) +
    scale_fill_gradient2(midpoint = 0, low = low, mid = mid, high = high, space = "Lab", limits = limit2show) +
    ggtitle(title2show) +
    theme_void() +
    theme(plot.title = element_text(hjust = 0.5)) +
    labs(fill = legend2show) +
    {
      if (hide_legend) theme(legend.position = "none")
    }

  return(p)
}
df2plot <- brain_data %>% tibble::rownames_to_column("label")
plot_brain(df2plot,
  ats = "dk", filterby = "none", limit2show = c(-0.3, 0.3),
  what2plot = "MDD", hem = "left", low = "#0197b2", mid = "white", high = "orange",
  legend2show = "Effect Size"
)

1.2. Create perm_id for the Analysis

perm_id is a list of permutations of brain regions with a spinning approach while trying to maintain the spatial structure of the brain. It is used to generate null distributions for the enrichment analysis. If you use this function to create perm_ids, consider citing the original source at https://github.com/frantisekvasa/rotate_parcellation and relevant papers.

# read the centroid coordinates of the brain regions
data(coord_dk_lh)
perm_id_dk_lh_5000 <- rotate_parcellation(coord.l = coord_dk_lh, nrot = 5000, seed = 2024)

Here, we load the precomputed perm_id directly from the package.

data(perm_id_dk_lh_5000)
str(perm_id_dk_lh_5000)
#>  num [1:34, 1:5000] 5 29 19 10 16 24 15 9 7 20 ...

1.3. Load gene expression data for the Analysis

gene_data <- get_geneExp(atlas = "desikan", rdonor = "r0.4", hem = "L")
str(gene_data)
#>  num [1:34, 1:6513] 0.469 0.607 0.512 0.341 0.664 ...
#>  - attr(*, "dimnames")=List of 2
#>   ..$ : chr [1:34] "L_bankssts" "L_caudalanteriorcingulate" "L_caudalmiddlefrontal" "L_cuneus" ...
#>   ..$ : chr [1:6513] "A1BG" "A1BG-AS1" "AACS" "AADAT" ...

1.4. Load GO MF for the Analysis

annoData <- get_annoData(type = "GO_MF")
geneSetList <- get_geneSetList(annoData)
length(geneSetList)
#> [1] 5060
print(sprintf("Number of MF terms: %d", length(geneSetList)))
#> [1] "Number of MF terms: 5060"

Filter the geneSetList (optional).

This step is embedded in the brainenrich function. Here is just to show how it is filtered.

selected.gs <- filter_geneSetList(bg_genes = colnames(gene_data), geneSetList = geneSetList, minGSSize = 20, maxGSSize = 200)
print(sprintf("%d MF terms have gene size ranging between 20 and 200", length(selected.gs)))

2. Run the Analysis

res <- brainenrich(
  brain_data = brain_data,
  gene_data = gene_data,
  annoData = annoData,
  perm_id = perm_id_dk_lh_5000,
  cor_method = "pearson",
  aggre_method = "mean",
  null_model = "spin_brain",
  n_perm = 5000,
  n_cores = 0,
  minGSSize = 20,
  maxGSSize = 200,
  pvalueCutoff = 1,
  threshold_type = "sd",
  threshold = 1
)

3. Visualize the Results

The res is a gseaResult object that is commonly used in clusterProfiler and DOSE packages. This means that we can use some existing functions (e.g., those from enrichplot package) to visualize the results.

3.1. Upset Plot

upsetplot(res, top = 15)

3.2. Gene-Concept Network

geneList <- res@geneList
cnetplot(res, layout='kk', color_category='#a6a6a6', foldChange=geneList,
          # color.params = list(foldChange = geneList),
          showtext=TRUE,
          node_label = 'gene',
          showCategory =10, cex.params = list(category_node=1, gene_node=0.8, gene_label=0.8),
          shadowtext = 'category')+
          scale_color_gradient2(midpoint=0,low='#0197b2',mid='white',high='orange',
                         space ="Lab" ,limits = c(-1,1), name='Association')

3.3. Dot Plot

dotplot(res, x = "gsScore", label_format = 50, showCategory = 30) +
  xlab("GS score") +
  scale_fill_gradient(high='#ffffff',low='orange',
          space ="Lab" , name='p.adjusted',limits = c(0,0.05)) +
          theme(legend.position = 'none')

3.4. Heatplot

heatplot(res, foldChange = geneList, label_format = 50, showCategory = 10, symbol="dot") +
  scale_fill_gradient2(
    midpoint = 0, low = "#0197b2", mid = "grey", high = "orange",
    space = "Lab", limits = c(-1, 1), name = "Association"
  )

3.5. Tree plot based on term similarity

Note: This requires GOSemSim and org.Hs.eg.db packages.

d <- GOSemSim::godata(annoDb = "org.Hs.eg.db", ont = "MF", keytype = "SYMBOL", computeIC = FALSE) # computeIC=FALSE when use Wang method
res <- pairwise_termsim(res, method = "Wang", semData = d)
treeplot(res,
  showCategory = 30,
  fontsize=4,
  cex_category = 0.9, color = "p.adjust",
  cluster.params = list( n = 5,label_words_n = 3,
  color = c("#FFB14ECC",  "#89be95cc","#8dc4d2", "#99bed3cc", "#ef9d8bcc")),
  offset = rel(2)
) + scale_color_continuous(high = "white", low = "orange",
    space = "Lab",  name = "gsScore"
  )+
theme(legend.position = 'right') 

4. Put results in a Table

res.df=as.data.frame(res)
# make scollable table
kable(res.df, format = "html", escape = FALSE) %>%
  kable_styling("striped", full_width = FALSE) %>%
  scroll_box(width = "100%", height = "400px")
ID Description setSize gsScore pvalue p.adjust qvalue core_enrichment
GO:0004519 GO:0004519 endonuclease activity 36 0.1381412 0.0002000 0.0039867 0.0024206 DNASE1L1/OGG1/RCL1/TSEN34/PLD6
GO:0005230 GO:0005230 extracellular ligand-gated monoatomic ion channel activity 31 -0.2628351 0.0002000 0.0039867 0.0024206 CHRNA2/GABRB2/GABRD/GRIK2/GRIN2A/GLRA3/P2RX6
GO:0005253 GO:0005253 monoatomic anion channel activity 34 -0.2937461 0.0002000 0.0039867 0.0024206 GABRB2/GABRD/GLRA3/SLC17A6/ANO6
GO:0005254 GO:0005254 chloride channel activity 33 -0.2961512 0.0002000 0.0039867 0.0024206 GABRB2/GABRD/GLRA3/SLC17A6/ANO6
GO:0005496 GO:0005496 steroid binding 46 0.1672464 0.0002000 0.0039867 0.0024206 CALB1/CD81/RORA/ERLIN1/PGRMC1/SIDT1/GPR155
GO:0008509 GO:0008509 monoatomic anion transmembrane transporter activity 47 -0.1704597 0.0002000 0.0039867 0.0024206 OCA2/SLC6A6/GLRA3/SLC5A6/SLC4A8/SLC17A6/SLC4A9
GO:0015103 GO:0015103 inorganic anion transmembrane transporter activity 50 -0.1523500 0.0002000 0.0039867 0.0024206 GABRB1/OCA2/SLC26A4/SLC6A6/GLRA3/SLC5A6/SLC17A6/SLC4A9/SLC26A11
GO:0015108 GO:0015108 chloride transmembrane transporter activity 42 -0.1998043 0.0002000 0.0039867 0.0024206 GABRB2/OCA2/SLC6A6/GLRA3/SLC4A8/SLC17A6/SLC4A9/SLC12A8
GO:0015248 GO:0015248 sterol transporter activity 20 0.2266985 0.0002000 0.0039867 0.0024206 APOE/PLTP
GO:0022824 GO:0022824 transmitter-gated monoatomic ion channel activity 29 -0.3047262 0.0002000 0.0039867 0.0024206 CHRNA2/GABRA1/GABRB2/GABRD/GRIN2A/GLRA3
GO:0022835 GO:0022835 transmitter-gated channel activity 29 -0.3047262 0.0002000 0.0039867 0.0024206 CHRNA2/GABRA1/GABRB2/GABRD/GRIN2A/GLRA3
GO:0030594 GO:0030594 neurotransmitter receptor activity 52 -0.2605532 0.0002000 0.0039867 0.0024206 ADRB1/CHRNA2/GABRB2/GABRD/GRIK2/GRIN2A/HRH2/HTR1F/GLRA3
GO:0032934 GO:0032934 sterol binding 32 0.0967745 0.0002000 0.0039867 0.0024206 RORA/ERLIN1/SIDT1/GPR155
GO:0098960 GO:0098960 postsynaptic neurotransmitter receptor activity 32 -0.2452023 0.0002000 0.0039867 0.0024206 ADRB1/CHRNA2/GABRB1/GABRB2/GABRD/GRIK2/GRIN2A
GO:0099529 GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential 23 -0.2269314 0.0002000 0.0039867 0.0024206 ADRB1/GABRB2/GRIK2/GRIN2A
GO:1904315 GO:1904315 transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential 21 -0.2376968 0.0002000 0.0039867 0.0024206 GABRB2/GRIK2/GRIN2A
GO:0003727 GO:0003727 single-stranded RNA binding 34 0.2439800 0.0003999 0.0060750 0.0036885 HNRNPC/POLR2G/CBX6/DHX58/PABPC1L
GO:0004725 GO:0004725 protein tyrosine phosphatase activity 34 -0.1157019 0.0003999 0.0060750 0.0036885 DUSP3/EYA4/PTPRA/PTPRF/PGP
GO:0008194 GO:0008194 UDP-glycosyltransferase activity 53 -0.1846132 0.0003999 0.0060750 0.0036885 EXTL2/GCNT1/MGAT1/LARGE1/XYLT1/XYLT2/B3GNT9/B3GLCT/B3GALNT2
GO:0030165 GO:0030165 PDZ domain binding 49 -0.1789868 0.0003999 0.0060750 0.0036885 ADRB1/ATP2B2/ATP2B3/ATP2B4/DTNA/GRIK2/SLC22A5/SSTR2/SHISA9
GO:0051213 GO:0051213 dioxygenase activity 33 0.1156888 0.0003999 0.0060750 0.0036885 CDO1/P4HA2/HSPBAP1/RIOX2/TYW5
GO:0003730 GO:0003730 mRNA 3’-UTR binding 37 0.2347905 0.0005999 0.0073601 0.0044687 ZFP36L1/CRYZ/HNRNPC/RPL41/ZNF385A/CSDC2/PABPC1L/CPEB2
GO:0004540 GO:0004540 RNA nuclease activity 34 0.1446817 0.0005999 0.0073601 0.0044687 RCL1/CNOT7/TSEN34/DCP2
GO:0008081 GO:0008081 phosphoric diester hydrolase activity 36 0.1247722 0.0005999 0.0073601 0.0044687 PDE1A/PDE2A/PLCB2/PLCB4/PLCD4
GO:0008227 GO:0008227 G protein-coupled amine receptor activity 23 -0.2291764 0.0005999 0.0073601 0.0044687 ADRA2A/ADRB1/HRH2/HTR1F
GO:0016706 GO:0016706 2-oxoglutarate-dependent dioxygenase activity 21 0.1501212 0.0005999 0.0073601 0.0044687 P4HA2/HSPBAP1/RIOX2/TYW5
GO:0140098 GO:0140098 catalytic activity, acting on RNA 108 0.1525681 0.0007998 0.0091125 0.0055327 DDX10/GATB/POLR2L/PRIM1/EMG1/METTL5/CNOT7/THG1L/DDX54/TSEN34/DHX58/TRMT2B/TDRD9/TYW5/METTL6/PTRH1/DCP2
GO:0140101 GO:0140101 catalytic activity, acting on a tRNA 33 0.1144280 0.0007998 0.0091125 0.0055327 THG1L/TSEN34/TRMT2B/TYW5/PTRH1
GO:0016597 GO:0016597 amino acid binding 20 -0.2932416 0.0009998 0.0102883 0.0062466 GLRB/GLRA3/UBR2
GO:0051540 GO:0051540 metal cluster binding 20 0.2362941 0.0009998 0.0102883 0.0062466 FXN/MOCS1/UQCRFS1/LIAS/NUBPL/AIFM3
GO:0140640 GO:0140640 catalytic activity, acting on a nucleic acid 155 0.1284692 0.0009998 0.0102883 0.0062466 CHD3/DDX10/OGG1/GATB/POLR2L/PRIM1/RFC3/SMARCA1/RCL1/EMG1/METTL5/CNOT7/TDP2/THG1L/POLE4/DDX54/TSEN34/DSCC1/DHX58/TRMT2B/TDRD9/TYW5/METTL6/PTRH1/DCP2
GO:0004930 GO:0004930 G protein-coupled receptor activity 141 -0.1267715 0.0017996 0.0179402 0.0108926 AR/CMKLR1/CNR1/EDNRA/GABRB1/GALR1/GRM8/HRH1/HTR1F/MC1R/NTSR1/OPRM1/SSTR1/SSTR2/VIPR2/FZD6/SPHK1/GPR161/OR7E24/GPR61/QRFPR/MRGPRF/TAS2R30/OR2AK2
GO:0005246 GO:0005246 calcium channel regulator activity 25 -0.1587008 0.0019996 0.0190005 0.0115363 CABP1/HPCAL4/STIM2/CACNG8
GO:0002039 GO:0002039 p53 binding 21 0.0856668 0.0021996 0.0190005 0.0115363 ZNF385A/SETD7/TAF3
GO:0031491 GO:0031491 nucleosome binding 20 0.1891281 0.0021996 0.0190005 0.0115363 PARP1/HNRNPC/SMARCA1
GO:0051219 GO:0051219 phosphoprotein binding 33 -0.1621371 0.0021996 0.0190005 0.0115363 EPB41/IRS1/SNCA/MID2/SHD
GO:0001653 GO:0001653 peptide receptor activity 34 -0.1738875 0.0023995 0.0190005 0.0115363 EDNRA/GALR1/MC1R/SSTR2/VIPR2/QRFPR
GO:0016741 GO:0016741 transferase activity, transferring one-carbon groups 70 0.1644546 0.0023995 0.0190005 0.0115363 HNMT/PRMT2/PNMT/EMG1/BHMT2/METTL5/METTL9/PRMT6/METTL17/TRMT2B/METTL6
GO:0045309 GO:0045309 protein phosphorylated amino acid binding 25 -0.1772403 0.0023995 0.0190005 0.0115363 IRS1/YWHAZ/SHD
GO:0004497 GO:0004497 monooxygenase activity 24 -0.2588758 0.0025995 0.0190005 0.0115363 MICAL2/CYP46A1/CYP20A1/FOXRED2/CYP4Z1
GO:0008186 GO:0008186 ATP-dependent activity, acting on RNA 24 0.2141053 0.0025995 0.0190005 0.0115363 DDX10/DDX54/DHX58/TDRD9
GO:0015485 GO:0015485 cholesterol binding 25 0.0960308 0.0025995 0.0190005 0.0115363 ERLIN1/SIDT1/GPR155
GO:0003729 GO:0003729 mRNA binding 101 0.1162701 0.0027994 0.0190005 0.0115363 GRSF1/HNRNPC/CAPRIN1/NOVA2/RPL41/SLBP/NELFE/RBM8A/CELF3/ZNF385A/CSDC2/YTHDF2/PCBP3/CELF4/CELF5/LARP4/CPEB2/HNRNPA1L2/NANOS1
GO:0004879 GO:0004879 nuclear receptor activity 26 0.1401725 0.0027994 0.0190005 0.0115363 NKX3-1/THRA/THRB/NR4A3/AHRR
GO:0008528 GO:0008528 G protein-coupled peptide receptor activity 33 -0.1887294 0.0027994 0.0190005 0.0115363 EDNRA/GALR1/MC1R/SSTR2/VIPR2/QRFPR
GO:0098531 GO:0098531 ligand-activated transcription factor activity 26 0.1401725 0.0027994 0.0190005 0.0115363 NKX3-1/THRA/THRB/NR4A3/AHRR
GO:0140993 GO:0140993 histone modifying activity 71 0.2114749 0.0027994 0.0190005 0.0115363 EYA1/EYA2/PRMT2/PRKAA2/TAF10/HDAC9/KAT7/PRMT6/RIOX2
GO:0004518 GO:0004518 nuclease activity 58 0.1236703 0.0029994 0.0195267 0.0118558 OGG1/TATDN2/RCL1/CNOT7/TDP2/EXD3/TSEN34/DCP2
GO:0008168 GO:0008168 methyltransferase activity 68 0.1655802 0.0029994 0.0195267 0.0118558 HNMT/PRMT2/PNMT/EMG1/BHMT2/METTL5/METTL9/PRMT6/METTL17/TRMT2B/METTL6
GO:0016758 GO:0016758 hexosyltransferase activity 67 -0.1172007 0.0031994 0.0204119 0.0123933 EXTL2/GCNT1/MGAT1/MTAP/B3GALNT1/LARGE1/ALG3/B4GAT1/B3GNT9/B3GALT6/B3GALNT2
GO:0017022 GO:0017022 myosin binding 34 -0.1617436 0.0033993 0.0212624 0.0129097 RAB11B/VEZT/TRAK2/MYO19/NKD2/CALML4
GO:0003925 GO:0003925 G protein activity 20 -0.2767398 0.0037992 0.0224437 0.0136269 RALB/RAB11B/RERG/RASL11A
GO:0008173 GO:0008173 RNA methyltransferase activity 20 0.1472525 0.0037992 0.0224437 0.0136269 EMG1/METTL5/TRMT2B/METTL6
GO:0042054 GO:0042054 histone methyltransferase activity 23 0.2547403 0.0037992 0.0224437 0.0136269 PRMT2/PRMT6
GO:0043178 GO:0043178 alcohol binding 42 0.1161983 0.0039992 0.0229235 0.0139183 CRABP1/RBP4/RLBP1/TRPC3/ERLIN1/SIDT1/GPR155
GO:0005546 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 35 -0.1017822 0.0041992 0.0229235 0.0139183 SYT1/OSBPL2/RAB35/PLCB1/PHLDA3/SNX21/SYT10
GO:0016278 GO:0016278 lysine N-methyltransferase activity 20 0.3239945 0.0041992 0.0229235 0.0139183 NSD2/METTL13/PRDM8/CAMKMT
GO:0016279 GO:0016279 protein-lysine N-methyltransferase activity 20 0.3239945 0.0041992 0.0229235 0.0139183 NSD2/METTL13/PRDM8/CAMKMT
GO:0016757 GO:0016757 glycosyltransferase activity 105 -0.0838306 0.0043991 0.0229235 0.0139183 EXTL2/GCNT1/MTAP/UPP1/TNKS/B3GALNT1/ST3GAL5/LARGE1/ALG3/ST3GAL6/B4GAT1/SIRT4/XYLT1/XYLT2/GALNT14/ST6GALNAC5/GLT8D2/B3GNT9/B3GALT6/B3GALNT2/DPY19L2P1
GO:0019212 GO:0019212 phosphatase inhibitor activity 21 -0.1521855 0.0043991 0.0229235 0.0139183 MGAT5/PPP1R10/TESC/ELFN2
GO:0140097 GO:0140097 catalytic activity, acting on DNA 58 0.1277621 0.0043991 0.0229235 0.0139183 CHD3/DNASE1L1/OGG1/RFC3/SMARCA1/TDP2/CHTF8/POLE4/DSCC1/PIF1
GO:0003724 GO:0003724 RNA helicase activity 23 0.1943884 0.0045991 0.0229235 0.0139183 DDX10/DDX54/DHX58/TDRD9
GO:0070888 GO:0070888 E-box binding 24 0.0795518 0.0045991 0.0229235 0.0139183 ASCL2/MITF/NEUROD6/BHLHE41/ATOH7
GO:1902936 GO:1902936 phosphatidylinositol bisphosphate binding 47 -0.1076329 0.0045991 0.0229235 0.0139183 SYT1/OSBPL2/RAB35/PLCB1/PHLDA3/LAPTM4B/TTPAL/SNX21/SYT10
GO:0019003 GO:0019003 GDP binding 36 -0.2405126 0.0047990 0.0235522 0.0143000 RALB/RAB11B/RERG/DIRAS1
GO:0051018 GO:0051018 protein kinase A binding 26 -0.1791389 0.0049990 0.0241618 0.0146701 PKIA/RYR2/AKAP1/GSKIP/LRRK2/DACT2
GO:0003774 GO:0003774 cytoskeletal motor activity 36 -0.1791040 0.0051990 0.0247533 0.0150292 DNAH5/KIF5A/MYH7/STARD9/MYH7B/DYNC2H1/MYO19/KIFC2
GO:0000287 GO:0000287 magnesium ion binding 86 0.1174816 0.0059988 0.0273374 0.0165982 ADCY2/ME1/PDE2A/SNCA/DYRK3/DYRK2/NEK6/NUDT5/MAST3/THG1L/PI4K2A/SRR
GO:0016811 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 26 0.1725263 0.0059988 0.0273374 0.0165982 AGA/HINT1/HDAC9/NIT2
GO:0031490 GO:0031490 chromatin DNA binding 40 0.1017134 0.0059988 0.0273374 0.0165982 CEBPA/HNRNPC/INSM1/SMAD3/THRA/THRB
GO:0019210 GO:0019210 kinase inhibitor activity 38 -0.1455030 0.0061988 0.0278508 0.0169099 CDKN1B/CDKN2C/CDKN2D/PKIA/SNCA/AKT1S1
GO:0004386 GO:0004386 helicase activity 44 0.1319631 0.0063987 0.0283499 0.0172129 CHD3/DDX10/RFC3/SMARCA1/DDX54/DHX58/TDRD9
GO:0016407 GO:0016407 acetyltransferase activity 27 0.1616316 0.0067986 0.0297091 0.0180382 ACAT2/TAF10/NCOA3/NAA10/SPHK1
GO:0003712 GO:0003712 transcription coregulator activity 178 0.0780972 0.0071986 0.0310316 0.0188412 BCL3/CRYM/FGF2/PRMT2/LMO1/PCBD1/TRIM27/SMARCD3/TLE2/UBE3A/NCOA3/ZBED1/HDAC9/BASP1/SUB1/WWC1/PHF24/TDP2/WNT4/YEATS2/LMO3/PRDM8/MTA3/SFMBT2/TRIB3/MMS19/DDX54/RIOX2/WTIP/JAZF1/MED11/HSBP1L1
GO:0003924 GO:0003924 GTPase activity 130 -0.1055985 0.0073985 0.0314684 0.0191064 DDX3X/EIF2S3/GNAS/RAB27B/RALB/TUBB2A/RND2/RAB11B/ENTPD4/RAB36/RGS6/TUBA1B/RRAS2/RHOBTB2/RHOQ/RASD2/ARL15/RASL11B/RERG/RAB3C/RHOV/ARL13B/ARL10/RAB37/RASL11A
GO:0015171 GO:0015171 amino acid transmembrane transporter activity 37 -0.1075989 0.0077984 0.0327329 0.0198741 GRIK2/SLC6A6/SLC7A4/SLC38A2/SLC17A6/SLC25A22
GO:0098632 GO:0098632 cell-cell adhesion mediator activity 24 -0.1717770 0.0079984 0.0331362 0.0201190 CNTN1/CNTN5/DSCAML1/NEXN/EMB
GO:0005525 GO:0005525 GTP binding 143 -0.0940807 0.0083983 0.0334883 0.0203328 EIF2S3/GNAS/INSR/MOCS1/RAB27B/RALB/TUBB2A/RND2/RAB11B/RAB36/TUBA1B/RRAS2/RHOBTB2/RHOQ/RASD2/EHD2/TUBD1/ARL15/THG1L/RASL11B/RERG/RAB3C/RHOV/ARL13B/ARL10/RAB37/RASL11A
GO:0016779 GO:0016779 nucleotidyltransferase activity 43 0.1299954 0.0083983 0.0334883 0.0203328 POLR2L/PRIM1/NUDT5/THG1L/POLE4/MB21D2/NMNAT3
GO:0042393 GO:0042393 histone binding 80 0.0929551 0.0083983 0.0334883 0.0203328 CHD3/RBBP7/SNCA/CHAF1B/TRIM24/PRMT6/COPRS/YEATS2/SFMBT2/KDM7A/L3MBTL4/UHRF2/PHF13
GO:0004860 GO:0004860 protein kinase inhibitor activity 37 -0.1417195 0.0087982 0.0342273 0.0207815 CDKN1B/CDKN2C/CDKN2D/PKIA/SNCA/AKT1S1
GO:0008757 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 57 0.1221933 0.0087982 0.0342273 0.0207815 HNMT/PRMT2/PNMT/EMG1/BHMT2/METTL5/METTL9/PRMT6/PRDM8/TRMT2B
GO:0019001 GO:0019001 guanyl nucleotide binding 150 -0.0972264 0.0093981 0.0352706 0.0214149 EIF2S3/GNAS/INSR/MOCS1/RAB27B/RALB/TUBB2A/RND2/RAB11B/RAB36/TUBA1B/RRAS2/RHOBTB2/RHOQ/RASD2/EHD2/TUBD1/ARL15/THG1L/RASL11B/RERG/RAB3C/RHOV/ARL13B/ARL10/RAB37/RASL11A
GO:0032561 GO:0032561 guanyl ribonucleotide binding 150 -0.0972264 0.0093981 0.0352706 0.0214149 EIF2S3/GNAS/INSR/MOCS1/RAB27B/RALB/TUBB2A/RND2/RAB11B/RAB36/TUBA1B/RRAS2/RHOBTB2/RHOQ/RASD2/EHD2/TUBD1/ARL15/THG1L/RASL11B/RERG/RAB3C/RHOV/ARL13B/ARL10/RAB37/RASL11A
GO:0140313 GO:0140313 molecular sequestering activity 20 -0.1838905 0.0093981 0.0352706 0.0214149 NFKBIA/PMEPA1/USP38
GO:0003682 GO:0003682 chromatin binding 199 0.0791305 0.0107978 0.0395921 0.0240387 AR/CEBPA/CENPF/EGFR/GLI1/HNRNPC/INSM1/SMAD2/SMAD3/MITF/NFKB1/PRKAA2/SMARCA1/SMARCD3/THRA/THRB/NELFA/NCOR2/SMC2/VCX/PRMT6/MEIS3/PRDM8/MTA3/SFMBT2/OVOL2/ASXL3/SETD7/SARNP/JDP2/HES5/EPOP
GO:0070851 GO:0070851 growth factor receptor binding 36 0.0630279 0.0107978 0.0395921 0.0240387 SLA/VEGFA/VAV3/PDGFC/LINGO1
GO:0005506 GO:0005506 iron ion binding 38 -0.1432670 0.0109978 0.0398670 0.0242057 PHYH/PPEF1/SNCA/P3H3/CYP46A1/HAAO/KDM7A/CYP4Z1
GO:0008276 GO:0008276 protein methyltransferase activity 34 0.1636149 0.0111978 0.0399546 0.0242589 PRMT2/PCMT1/FAM98A/METTL9/PRMT6/PRDM8
GO:0003713 GO:0003713 transcription coactivator activity 93 0.0655950 0.0113977 0.0399546 0.0242589 BCL3/FGF2/PRMT2/LMO1/PCBD1/TRIM27/SMARCD3/UBE3A/NCOA3/ZBED1/SUB1/WWC1/LMO3/MTA3/MMS19
GO:0043021 GO:0043021 ribonucleoprotein complex binding 53 0.0842727 0.0113977 0.0399546 0.0242589 DDX3X/EIF2S1/SRP19/IMPACT/TMEM223/NAA16/DAPL1/UHMK1/CPEB2
GO:0097110 GO:0097110 scaffold protein binding 36 -0.1824772 0.0119976 0.0416004 0.0252581 ATP2B4/GRIK2/IKBKB/ITPR2/KRT8/TCOF1/BAIAP2
GO:0008094 GO:0008094 ATP-dependent activity, acting on DNA 33 0.1116206 0.0123975 0.0425248 0.0258194 CHD3/RFC3/SMARCA1/DSCC1/PIF1
GO:1990841 GO:1990841 promoter-specific chromatin binding 23 0.2135912 0.0127974 0.0434296 0.0263687 SMAD3/TAF10/WDR13/PCGF1
GO:0016835 GO:0016835 carbon-oxygen lyase activity 28 -0.1936351 0.0133973 0.0449868 0.0273142 ACO1/CA7/CA12/OGG1/CA10/NEIL1
GO:0001227 GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific 103 0.0968938 0.0137972 0.0453744 0.0275496 ASCL2/CREM/ENO1/INSM1/MITF/PPARD/MAFK/ZNF239/KLF8/BATF3/OVOL2/BHLHE41/MYPOP/HES5/SP5
GO:0140678 GO:0140678 molecular function inhibitor activity 169 -0.0925229 0.0137972 0.0453744 0.0275496 ATP2B4/CDKN1B/CDKN2C/CDKN2D/COL7A1/FKBP1A/GMFB/KNG1/LRPAP1/LY6H/NFKBIA/NKX3-1/SERPINB9/PKIA/PRNP/SCN1B/SLN/SNCA/STX1A/SLIT2/FRAT1/WFDC2/PPP1R16B/DKK3/GSKIP/SCN3B/PIF1/TAF3/AKT1S1/WFIKKN1
GO:0008238 GO:0008238 exopeptidase activity 27 0.1540201 0.0141972 0.0462132 0.0280588 CTSC/CPE/AGTPBP1/SCPEP1
GO:0001540 GO:0001540 amyloid-beta binding 40 -0.0880231 0.0163967 0.0528339 0.0320786 EPHB2/GRIA1/INSR/LRPAP1/PRNP/ITM2A/PGRMC1/MAPK8IP2
GO:0008170 GO:0008170 N-methyltransferase activity 31 0.1389267 0.0165967 0.0529434 0.0321451 HNMT/PRMT2/PNMT/METTL5/PRMT6
GO:0001217 GO:0001217 DNA-binding transcription repressor activity 106 0.0833669 0.0175965 0.0555770 0.0337442 ASCL2/CREM/INSM1/SMAD3/MITF/PPARD/MAFK/ZNF239/KLF8/BATF3/OVOL2/BHLHE41/JDP2/ZNF418/MYPOP/HES5/SP5
GO:0019208 GO:0019208 phosphatase regulator activity 45 -0.0723651 0.0177964 0.0556575 0.0337930 ARPP19/PPP1R16B/PDP2/PPP4R4/PPP1R3B/ELFN2
GO:0048306 GO:0048306 calcium-dependent protein binding 36 -0.1442816 0.0185963 0.0575943 0.0349690 SYT1/TNNI3/CABP1/CPLX2/RBM22
GO:0004252 GO:0004252 serine-type endopeptidase activity 33 -0.1126183 0.0187962 0.0576539 0.0350051 C1S/CTSC/F12/RHBDL3/PRSS56
GO:0043621 GO:0043621 protein self-association 21 0.1615651 0.0189962 0.0577123 0.0350406 ACVR2A/CTSC/MDH2/NKX3-1/RETREG1
GO:0015293 GO:0015293 symporter activity 48 0.1111128 0.0191962 0.0577696 0.0350754 SLC1A4/SLC39A10/SLC25A22/SLC2A12
GO:0050660 GO:0050660 flavin adenine dinucleotide binding 28 -0.1942033 0.0201960 0.0591482 0.0359124 MAOB/SDHA/DUS1L/PYROXD1/AIFM3
GO:0004857 GO:0004857 enzyme inhibitor activity 126 -0.0831490 0.0203959 0.0591482 0.0359124 ATP2B4/CDKN1B/CDKN2C/CDKN2D/COL7A1/GMFB/KNG1/SERPINB9/PKIA/PRNP/SLN/SNCA/SLIT2/WFDC2/PPP1R16B/GSKIP/UBE2Z/PIF1/AKT1S1/ELFN2/WFIKKN1/SPINK8
GO:0016829 GO:0016829 lyase activity 74 -0.1229521 0.0203959 0.0591482 0.0359124 ACO1/ADCY2/ADCY7/ADCY9/AMD1/CA7/MGST2/MOCS1/OGG1/CA10/GGCT/ARMT1/TSEN2/SDSL
GO:0019888 GO:0019888 protein phosphatase regulator activity 38 -0.0673414 0.0203959 0.0591482 0.0359124 ARPP19/PPP1R16B/PDP2/PPP4R4/PPP1R3B/ELFN2
GO:0000149 GO:0000149 SNARE binding 55 -0.0565997 0.0205959 0.0591900 0.0359378 GRIK2/SNCA/VAMP1/BAIAP3/SEC24D/SYT2/UNC13C
GO:0140297 GO:0140297 DNA-binding transcription factor binding 184 0.0532555 0.0217956 0.0620787 0.0376917 AR/ASCL2/BCL3/CEBPA/CREM/ESRRB/PRMT2/DNAJA1/LMO1/SMAD2/NFKBIA/NKX3-1/PPARD/MAPK3/RXRA/SMARCD3/USF2/WFS1/YWHAH/YWHAZ/NR4A3/NCOA3/TRIP12/NCOR2/HDAC9/ARNT2/DACT1/BEX1/HDAC8/LMO3/MMS19/DDX54/BHLHE41/RERG/UHRF2/DNAAF4
GO:0015294 GO:0015294 solute:monoatomic cation symporter activity 31 0.1583998 0.0229954 0.0649162 0.0394146 SLC39A10/SLC25A22
GO:0016747 GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 71 0.0789904 0.0239952 0.0671445 0.0407675 NMT1/NCOA3/SPHK1/OSGEPL1/MBOAT7/PNPLA3/MOGAT1/MBOAT2/LCLAT1/CERS6/ZDHHC23
GO:0016782 GO:0016782 transferase activity, transferring sulphur-containing groups 27 -0.0979314 0.0247950 0.0687793 0.0417601 OXCT1/CHST1/NDST3/HS3ST1/LIAS/CHST15/HS6ST2
GO:0001664 GO:0001664 G protein-coupled receptor binding 95 -0.1204375 0.0253949 0.0692391 0.0420393 ADM/GNAS/JAK2/PENK/POMC/PRNP/CXCL12/UCHL1/WNT10B/HOMER3/ARHGEF11/CCL27/CNRIP1/REEP2/NECAB2/RSPO3
GO:0020037 GO:0020037 heme binding 35 -0.0786031 0.0253949 0.0692391 0.0420393 SDHD/NR1D1/ABCB6/CYP46A1/DGCR8/RSAD1/CYP4Z1
GO:0042826 GO:0042826 histone deacetylase binding 47 0.0777891 0.0277944 0.0751392 0.0456216 BCL3/INSM1/NKX3-1/YWHAB/HDAC9/MTA3/BHLHE41/BRMS1L/KCTD21
GO:0140104 GO:0140104 molecular carrier activity 30 -0.1238750 0.0309938 0.0830842 0.0504455 PEX19/MTCH1/RANBP17/URM1/JDP2
GO:0016836 GO:0016836 hydro-lyase activity 22 -0.1597426 0.0317936 0.0845181 0.0513161 ACO1/CA7/CA12/CA10
GO:0019894 GO:0019894 kinesin binding 24 0.1374250 0.0323935 0.0854011 0.0518522 SNCA/NEK6/MAPK8IP2
GO:0043022 GO:0043022 ribosome binding 32 0.1185089 0.0341932 0.0894067 0.0542842 EIF2S1/SRP19/IMPACT/TMEM223/DAPL1/CPEB2
GO:0046906 GO:0046906 tetrapyrrole binding 36 -0.0653762 0.0351930 0.0912728 0.0554172 SDHD/NR1D1/ABCB6/CYP46A1/DGCR8/RSAD1/CYP4Z1
GO:0005272 GO:0005272 sodium channel activity 22 -0.0955625 0.0357928 0.0920800 0.0559073 HCN2/GRIK2/SCN3B
GO:0004714 GO:0004714 transmembrane receptor protein tyrosine kinase activity 30 -0.0543900 0.0379924 0.0961871 0.0584010 EFNB3/EGFR/FLT1/FLT3/RET/TYRO3/EPHA10
GO:0008236 GO:0008236 serine-type peptidase activity 41 -0.0917318 0.0379924 0.0961871 0.0584010 C1R/C1S/CTSC/F12/PCSK5/NAALAD2/RHBDL3/PRSS56
GO:0005539 GO:0005539 glycosaminoglycan binding 75 -0.0872984 0.0387922 0.0974388 0.0591610 ACAN/DPYSL3/EXTL2/FGF9/KNG1/LRPAP1/PRNP/PTPRF/SLIT1/VEGFA/SLIT2/ADAMTS5/FSTL1/RSPO3/RSPO2
GO:0052689 GO:0052689 carboxylic ester hydrolase activity 45 -0.1022666 0.0421916 0.1051493 0.0638425 BAAT/NDST3/ACOT2/ABHD12/PNPLA3/ABHD3/GDPD1
GO:0051015 GO:0051015 actin filament binding 82 -0.0632865 0.0431914 0.1068065 0.0648487 ADD1/EGFR/GAS2/MARCKS/MYH7/NEB/SPTB/CORO1A/COTL1/ACTR3B/MYH7B/MYO19/TLN2/NEXN
GO:0001618 GO:0001618 virus receptor activity 25 -0.1054682 0.0459908 0.1124798 0.0682933 EFNB2/EFNB3/EGFR/IDE/ITGB1/SLC20A2
GO:0008013 GO:0008013 beta-catenin binding 34 -0.0612175 0.0461908 0.1124798 0.0682933 AR/CTNND2/CXADR/PXN/RORA
GO:0003779 GO:0003779 actin binding 172 -0.0577877 0.0475905 0.1142458 0.0693655 ADD1/EGFR/EPB41/EPB41L1/GAS2/GMFB/HPCA/ITGB1/MARCKS/MYH7/NEB/SNCA/SPTB/UTRN/YWHAH/TMSB10/CORO1A/KLHL2/STK38L/COTL1/MYRIP/KLHL20/SNTG2/ACTR3B/MYH7B/CORO7/MYO19/TLN2/NEXN/PACRG
GO:0008234 GO:0008234 cysteine-type peptidase activity 64 0.0685493 0.0477904 0.1142458 0.0693655 CTSC/CTSO/HINT1/UCHL1/UCHL3/USP5/USP13/OTUB2/USP45
GO:0005544 GO:0005544 calcium-dependent phospholipid binding 31 -0.1026135 0.0479904 0.1142458 0.0693655 DOC2A/CPNE7/SYT17/SYT15/SYT3/SYT2
GO:0008017 GO:0008017 microtubule binding 95 0.1028842 0.0489902 0.1157620 0.0702861 CENPF/CETN2/DYNC1I1/FGF13/GAS2/GLI1/KIF2A/KIF3C/OGG1/PAFAH1B1/PRNP/STIM1/KIF21B/HDGFL3/NAV3/JAKMIP1
GO:0043177 GO:0043177 organic acid binding 74 -0.1601714 0.0505899 0.1186630 0.0720475 ASS1/CRABP1/PC/PHYH/PPARD/RYR2/SCP2/GLRA3/P3H3/UBR2
GO:0008146 GO:0008146 sulfotransferase activity 23 -0.0862994 0.0515897 0.1198838 0.0727887 CHST1/NDST3/HS3ST1/CHST15/HS6ST2
GO:0005200 GO:0005200 structural constituent of cytoskeleton 48 -0.0950032 0.0523895 0.1198838 0.0727887 ANK1/ANK3/EPB41/SPTB/TUBB2A/INA/SORBS3/TUBD1/TLN2
GO:0005319 GO:0005319 lipid transporter activity 54 0.0507486 0.0523895 0.1198838 0.0727887 RBP4/C2CD2L/OSBPL2/SLC27A2/ATP10D/PITPNM2/PCTP/ANO3
GO:0017124 GO:0017124 SH3 domain binding 51 -0.0462300 0.0529894 0.1198838 0.0727887 DPYSL3/PAK3/SH3BGRL/TOM1L1/SOCS7/ELMO2/ARHGAP27
GO:0035064 GO:0035064 methylated histone binding 20 0.1269467 0.0529894 0.1198838 0.0727887 CBX6/ING3/KDM7A/PHF13
GO:0038024 GO:0038024 cargo receptor activity 25 -0.1320854 0.0535893 0.1199914 0.0728540 ASGR1/INSR/SORL1/TMED10/SCARA3/SCARA5
GO:0140272 GO:0140272 exogenous protein binding 26 -0.0981483 0.0537892 0.1199914 0.0728540 EFNB2/EFNB3/EGFR/IDE/ITGB1/SLC20A2
GO:0016705 GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 50 -0.0672752 0.0545891 0.1209300 0.0734239 FADS3/PHYH/CYP46A1/HSPBAP1/KDM7A/TYW5/CYP4Z1/CYP4X1
GO:0031406 GO:0031406 carboxylic acid binding 72 -0.1610053 0.0553889 0.1218556 0.0739859 ASS1/CRABP1/PC/PHYH/PPARD/SCP2/GLRA3/P3H3/UBR2
GO:0022834 GO:0022834 ligand-gated channel activity 75 -0.0867962 0.0557888 0.1218948 0.0740097 HCN2/GABRA5/GABRB1/GRIK2/KCNJ14/KCNN1/TRPC3/GLRA3/KCNMB4/KCNT1
GO:0141108 GO:0141108 transporter regulator activity 68 -0.0933745 0.0589882 0.1280055 0.0777199 ATP2B4/FGF13/GPLD1/SCN1B/KCNAB3/KCNMB4/HPCAL4/FXYD6/SCN3B/STIM2/LRRC38/SCLT1
GO:0099106 GO:0099106 ion channel regulator activity 65 -0.0884395 0.0593881 0.1280055 0.0777199 ATP2B4/FGF13/GPLD1/SCN1B/YWHAH/KCNAB3/KCNMB4/HPCAL4/FXYD6/SCN3B/STIM2/LRRC38/SCLT1
GO:0061629 GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding 138 0.0573452 0.0627874 0.1344241 0.0816170 AR/CEBPA/ESRRB/PRMT2/DNAJA1/SMAD2/NFKBIA/NKX3-1/RXRA/SMARCD3/YWHAH/NR4A3/NCOA3/TRIP12/NCOR2/HDAC9/ARNT2/DACT1/HES6/BEX1/MMS19/DDRGK1/DDX54/BHLHE41/RERG/UHRF2/DNAAF4
GO:0016887 GO:0016887 ATP hydrolysis activity 118 0.0672515 0.0645871 0.1372904 0.0833573 ATP2B4/DDX10/DNAH5/KIF2A/KIF3C/RFC3/TAP1/HSP90B1/ABCB6/KIF21B/DDX54/DHX58/PIF1/NAV3/TDRD9/DNAH2/FIGNL2
GO:0030374 GO:0030374 nuclear receptor coactivator activity 21 0.1097426 0.0649870 0.1372904 0.0833573 FGF2/NCOA3
GO:0042578 GO:0042578 phosphoric ester hydrolase activity 140 0.0363955 0.0657868 0.1375803 0.0835333 DUSP3/EDNRA/EYA4/PDE1A/PDE2A/PLCB4/PPEF1/PPP1CC/PPP1R3D/PTPRA/PTPRF/PTPRR/PUDP/PLPP1/PLPPR4/BCKDK/INPP5F/NT5DC3/TDP2/PLPPR2/PLPPR3/PLCD4/PPM1M/PPM1K
GO:0016247 GO:0016247 channel regulator activity 67 -0.0888943 0.0659868 0.1375803 0.0835333 ATP2B4/FGF13/GPLD1/SCN1B/YWHAH/KCNAB3/KCNMB4/HPCAL4/FXYD6/SCN3B/STIM2/LRRC38/SCLT1
GO:0051117 GO:0051117 ATPase binding 33 -0.0632129 0.0675865 0.1400006 0.0850028 ANK1/AR/EGFR/PEX19/RALB/SLN/NKD2
GO:0045296 GO:0045296 cadherin binding 129 -0.0531978 0.0717856 0.1476102 0.0896231 ACVR1/ADD1/ANK3/CDH7/CDH8/CDH9/CDH10/CTNND2/DDX3X/EGFR/EIF2S3/ITGB1/LDHA/YWHAB/YWHAZ/CTNNAL1/RAB11B/BAIAP2/COBLL1/DOCK9/TES/GLOD4/EIF2A
GO:0042277 GO:0042277 peptide binding 124 -0.0780807 0.0721856 0.1476102 0.0896231 ACVR1/GALR1/IDE/INHBA/INSR/LRPAP1/MGST2/MICB/NFKBIA/OPRM1/PCSK5/PRNP/PEX19/SSTR1/SSTR2/TAP1/VIPR2/GLP2R/ITM2A/TMEM158/QRFPR/MICA
GO:0017171 GO:0017171 serine hydrolase activity 43 -0.0789661 0.0731854 0.1487015 0.0902857 C1R/C1S/CTSC/F12/PCSK5/NAALAD2/RHBDD2/RHBDL3/PRSS56
GO:0016874 GO:0016874 ligase activity 39 -0.0986510 0.0775845 0.1566421 0.0951069 ASS1/ATP5F1B/ACSL4/UBA3/SLC27A2/ACSL6/CTPS2
GO:0003697 GO:0003697 single-stranded DNA binding 36 0.0571994 0.0815837 0.1636805 0.0993803 SMC2/SUB1/TDP2/PCBP3/NABP1/CTC1
GO:0015276 GO:0015276 ligand-gated monoatomic ion channel activity 74 -0.0803083 0.0861828 0.1718269 0.1043265 HCN2/GABRA5/GABRB1/GRIK2/KCNJ14/KCNN1/TRPC3/GLRA3/KCNMB4/KCNT1
GO:0004527 GO:0004527 exonuclease activity 21 0.0961035 0.0887822 0.1752180 0.1063855 DCPS/CNOT7/EXD3/DIS3L2/DCP2
GO:0008201 GO:0008201 heparin binding 55 -0.0652300 0.0889822 0.1752180 0.1063855 KNG1/PTPRF/SLIT1/VEGFA/SLIT2/ADAMTS5/FSTL1/RSPO3/RSPO2
GO:0044325 GO:0044325 transmembrane transporter binding 67 -0.0664090 0.0913817 0.1779126 0.1080215 ANK1/ANK3/FGF13/FKBP1A/KCNC1/PRNP/SCN1B/YWHAH/YWHAZ/KCNAB3/PACS1/SCN3B/LRRC38
GO:0016853 GO:0016853 isomerase activity 55 -0.1081985 0.0915817 0.1779126 0.1080215 FKBP1A/FKBP5/PDIA5/RPUSD2/PPIL3/ENOX1/TRUB1/TMEM86B/PGM2L1
GO:0019199 GO:0019199 transmembrane receptor protein kinase activity 39 -0.0495474 0.0921816 0.1779126 0.1080215 EFNB3/EGFR/FLT1/FLT3/RET/TYRO3/ACVR1C/EPHA10
GO:0019207 GO:0019207 kinase regulator activity 105 -0.0512213 0.0925815 0.1779126 0.1080215 CDKN1B/CDKN2C/CDKN2D/DDX3X/EGFR/FLT3/GMFB/PKIA/SNCA/VEGFA/YWHAB/TOM1L1/SOCS7/GSKIP/AKT1S1/CCNYL1/CD24
GO:0016209 GO:0016209 antioxidant activity 23 -0.1168100 0.0933813 0.1783751 0.1083023 GPX7/GSTT1/MGST2/SRXN1
GO:0001221 GO:0001221 transcription coregulator binding 47 0.0460191 0.0963807 0.1830086 0.1111156 AR/PPARD/RORA/RXRA/SMARCD3/THRB/BAIAP2/WIZ
GO:0000049 GO:0000049 tRNA binding 23 0.0464164 0.1005799 0.1894856 0.1150482 EIF2S3/WDR6/THG1L/TYW5
GO:0101005 GO:0101005 deubiquitinase activity 41 0.0819657 0.1009798 0.1894856 0.1150482 UCHL1/UCHL3/USP5/USP13/OTUB2/USP45
GO:0003725 GO:0003725 double-stranded RNA binding 26 0.0551016 0.1019796 0.1902427 0.1155078 TUBA1B/SIDT2/SIDT1/DHX58
GO:0140034 GO:0140034 methylation-dependent protein binding 21 0.0964844 0.1051790 0.1950703 0.1184390 CBX6/PHF20L1/KDM7A/PHF13
GO:0140030 GO:0140030 modification-dependent protein binding 58 0.0507884 0.1095781 0.2020544 0.1226794 IDE/BRD2/VAV1/BABAM2/DZIP3/OPTN/ZBTB1/PHF20L1/YEATS2/KDM7A
GO:0048029 GO:0048029 monosaccharide binding 23 -0.1075522 0.1109778 0.2026612 0.1230479 PHYH/P3H3/LMAN2L
GO:0004843 GO:0004843 cysteine-type deubiquitinase activity 38 0.0787308 0.1111778 0.2026612 0.1230479 UCHL1/UCHL3/USP5/USP13/OTUB2/USP45
GO:0019783 GO:0019783 ubiquitin-like protein peptidase activity 47 0.0680619 0.1119776 0.2029594 0.1232289 HINT1/UCHL1/UCHL3/USP5/USP13/COPS4/OTUB2/USP45
GO:0033218 GO:0033218 amide binding 149 -0.0693723 0.1139772 0.2054165 0.1247208 ACVR1/FKBP1A/FKBP1B/FKBP5/GALR1/IDE/INHBA/INSR/LRPAP1/MGST2/MICB/NFKBIA/OPRM1/PCSK5/PRNP/PEX19/SCP2/SOAT1/SSTR1/SSTR2/TAP1/VIPR2/GLP2R/ITM2A/TMEM158/LAPTM4B/PNPLA3/MAP1LC3B/QRFPR/MICA
GO:0046982 GO:0046982 protein heterodimerization activity 93 0.0388416 0.1199760 0.2150132 0.1305475 ADRA1B/ADRA2C/DR1/GABBR1/ITGB1/SYT1/USF2/YWHAH/UBA3/KCNB2/ARNT2/ZBTB1/ABTB2/TENM3/RRAGD/BHLHE41/TAF3/JDP2/SYT10/CENPW
GO:0005125 GO:0005125 cytokine activity 46 -0.0944998 0.1269746 0.2262844 0.1373909 GDF10/INHBA/LTB/CXCL12/VEGFA/WNT10B/CCL27/CMTM8
GO:0098631 GO:0098631 cell adhesion mediator activity 29 -0.0715788 0.1323735 0.2345953 0.1424370 CNTN1/ITGB1/ITGA11/NEXN
GO:0004713 GO:0004713 protein tyrosine kinase activity 55 -0.0386825 0.1353729 0.2385854 0.1448597 EFNB3/EGFR/MATK/NEK1/PRKCD/MAP2K3/RET/TYRO3/DYRK3/DYRK2/DYRK4/STYK1/EPHA10
GO:0015267 GO:0015267 channel activity 196 -0.0575686 0.1379724 0.2405093 0.1460277 HCN2/GABRA3/GABRA5/GABRB1/GABRG1/GRIK2/KCNC1/KCNC3/KCNC4/KCNJ14/OCA2/OPRM1/SCN1A/SCN1B/SCN3A/TRPC3/GLRA3/KCNAB3/KCNB2/KCNMB4/SCN3B/KCNK12/SLC17A6/KCNT1/STIM2/ANO3/TMEM109/TRPM3/LRRC38/KCNG3/SLC26A11/TMEM150C
GO:0022803 GO:0022803 passive transmembrane transporter activity 196 -0.0575686 0.1379724 0.2405093 0.1460277 HCN2/GABRA3/GABRA5/GABRB1/GABRG1/GRIK2/KCNC1/KCNC3/KCNC4/KCNJ14/OCA2/OPRM1/SCN1A/SCN1B/SCN3A/TRPC3/GLRA3/KCNAB3/KCNB2/KCNMB4/SCN3B/KCNK12/SLC17A6/KCNT1/STIM2/ANO3/TMEM109/TRPM3/LRRC38/KCNG3/SLC26A11/TMEM150C
GO:0019887 GO:0019887 protein kinase regulator activity 93 -0.0492509 0.1393721 0.2416288 0.1467075 CDKN2C/CDKN2D/DDX3X/EGFR/GMFB/PKIA/SNCA/VEGFA/YWHAB/TOM1L1/GSKIP/AKT1S1/CCNYL1/CD24
GO:0044389 GO:0044389 ubiquitin-like protein ligase binding 128 -0.0604206 0.1405719 0.2423915 0.1471706 BID/CDKN1B/EGFR/GRIK2/DNAJA1/SMAD1/MC1R/NFKBIA/RALB/UBE2B/UBE2G1/UCHL1/YWHAZ/TNFRSF14/USP13/TUBA1B/PPARGC1A/SPART/LAPTM4B/MAP1LC3B/NKD2
GO:0017018 GO:0017018 myosin phosphatase activity 30 -0.0735516 0.1415717 0.2428031 0.1474204 DUSP3/PPEF1/PPM1B/PPP1CC/PPM1M
GO:0015291 GO:0015291 secondary active transmembrane transporter activity 82 0.0486317 0.1437712 0.2452568 0.1489103 SLC26A4/SLC6A6/SLC16A2/SLC22A5/SLC30A10/SLC39A10/SLC39A8/SLC25A23/SLC25A22/SLC4A9/SLC2A12/SLC26A11
GO:0030246 GO:0030246 carbohydrate binding 75 -0.0677689 0.1449710 0.2459880 0.1493542 ACAN/CANX/CNTN1/PHYH/PPP1R3D/PTX3/CLEC2B/PLA2R1/GPCPD1/CHID1/GALNT14/PPP1R3B/LMAN2L/PPP1R3F
GO:0030545 GO:0030545 signaling receptor regulator activity 144 -0.0501499 0.1517696 0.2554829 0.1551192 ADM/EGFR/FGF13/FKBP1A/GAS6/GDF10/GMFB/GNRH1/IGF1/INHBA/KNG1/LY6H/PENK/POMC/VEGFA/WNT10B/SEMA7A/FGF18/SEMA4F/CCL27/DKK3/NRG4/ERFE/CMTM8/FNDC5
GO:0002020 GO:0002020 protease binding 41 -0.0806527 0.1527694 0.2554829 0.1551192 ECM1/ITGB1/MBP/SERPINB9/PRNP/RIPK2/CHL1/RHBDD2/CCBE1
GO:0001228 GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific 139 0.0356478 0.1529694 0.2554829 0.1551192 AR/ASCL2/CEBPA/KLF6/E2F3/ESRRB/ESRRG/MECOM/SMAD1/SMAD2/MAFG/MITF/MYB/NFIC/NFKB1/PBX3/POU3F2/RFX5/KLF10/NR4A3/ZBED1/ARNT2/MESP1/MEIS3/OVOL2/NEUROD6
GO:0035591 GO:0035591 signaling adaptor activity 43 -0.0507200 0.1631674 0.2710958 0.1645987 DDX3X/IFNAR2/PAG1/CDC42SE2/GNB4
GO:0090079 GO:0090079 translation regulator activity, nucleic acid binding 35 0.0762806 0.1645671 0.2720047 0.1651505 EIF2S1/EIF2S3/EIF1AY/GSPT2/EIF5A2/CELF4/EIF2A/CPEB2
GO:0072341 GO:0072341 modified amino acid binding 40 -0.0542680 0.1697660 0.2789065 0.1693410 GAS6/MGST2/SYT17/GRAMD1B/SYT3/SYT2
GO:0003714 GO:0003714 transcription corepressor activity 74 0.0409263 0.1707658 0.2789065 0.1693410 BCL3/CRYM/TLE2/HDAC9/TDP2/YEATS2/PRDM8/MTA3/TRIB3/RIOX2/WTIP/JAZF1/HSBP1L1
GO:0043130 GO:0043130 ubiquitin binding 39 -0.0445804 0.1713657 0.2789065 0.1693410 UCHL1/UCHL3/USP13/TOM1L1/GGA2/VPS36/NSFL1C/OTUB2
GO:0019955 GO:0019955 cytokine binding 37 -0.1087110 0.1775645 0.2875283 0.1745758 ACVR1/IFNAR2/ITGB1/TNFRSF11A/PDPN/KLHL20/WFIKKN1
GO:0003735 GO:0003735 structural constituent of ribosome 37 -0.1402996 0.1849630 0.2979960 0.1809314 RPL15/RPL27A/MRPL37/MRPL30/MRPL35/MRPL16/MRPS11
GO:0005096 GO:0005096 GTPase activator activity 122 -0.0370724 0.1901620 0.3048325 0.1850823 ARHGDIG/BCR/RASAL1/RGS6/USP6NL/GIT2/ARHGEF11/VAV3/RAB3GAP1/FAM13B/TBC1D13/TBC1D19/TBC1D24/ARHGAP9/ARHGAP28/ARHGAP33/ARHGAP27
GO:0016410 GO:0016410 N-acyltransferase activity 26 0.1034334 0.1921616 0.3064977 0.1860933 NMT1/NCOA3/CERS6
GO:0042562 GO:0042562 hormone binding 41 0.0297653 0.1961608 0.3107664 0.1886851 AR/CRYM/EGFR/INHBA/MC1R/THRA/THRB/GLP2R
GO:0015081 GO:0015081 sodium ion transmembrane transporter activity 49 0.0873166 0.1973605 0.3107664 0.1886851 HCN2/GRIK2/GRIK3/KCNK1/SCN2A/SCN3A/SCN9A/SCN3B
GO:0031625 GO:0031625 ubiquitin protein ligase binding 123 -0.0544213 0.1977604 0.3107664 0.1886851 ACTG1/BID/CDKN1B/EGFR/GRIK2/DNAJA1/SMAD1/MC1R/NFKBIA/RALB/UBE2B/UBE2G1/UCHL1/YWHAZ/TNFRSF14/USP13/TUBA1B/PPARGC1A/SPART/LAPTM4B/MAP1LC3B/NKD2/PACRG
GO:0001216 GO:0001216 DNA-binding transcription activator activity 141 0.0317252 0.2025595 0.3155135 0.1915673 AR/ASCL2/CEBPA/KLF6/E2F3/E2F5/ERG/ESRRB/ESRRG/MECOM/SMAD1/SMAD2/MAFG/MITF/MYB/NFIC/NFKB1/PBX3/POU3F2/RFX5/KLF10/NR4A3/ZBED1/ARNT2/MESP1/MEIS3/OVOL2/NEUROD6
GO:0033293 GO:0033293 monocarboxylic acid binding 34 -0.1185569 0.2027594 0.3155135 0.1915673 CRABP1/CYP26A1/FABP7/PPARD/SCP2
GO:0001222 GO:0001222 transcription corepressor binding 21 0.0590390 0.2037592 0.3155301 0.1915774 RORA/NEK6/FAM89B/WIZ
GO:0048018 GO:0048018 receptor ligand activity 128 -0.0444976 0.2063587 0.3161894 0.1919777 ADM/FGF13/GAS6/GDF10/GMFB/GNRH1/IGF1/INHBA/KNG1/PENK/POMC/VEGFA/WNT10B/SEMA7A/FGF18/SEMA4F/CCL27/NRG4/ERFE/CMTM8/FNDC5
GO:0005342 GO:0005342 organic acid transmembrane transporter activity 59 -0.0483623 0.2071586 0.3161894 0.1919777 GRIK2/SLC26A4/SLC6A6/SLC7A4/SLC16A2/SLC16A6/MPC1/SLC17A6/SLC25A22
GO:0046943 GO:0046943 carboxylic acid transmembrane transporter activity 59 -0.0483623 0.2071586 0.3161894 0.1919777 GRIK2/SLC26A4/SLC6A6/SLC7A4/SLC16A2/SLC16A6/MPC1/SLC17A6/SLC25A22
GO:0004674 GO:0004674 protein serine/threonine kinase activity 157 0.0541950 0.2097580 0.3186325 0.1934611 ACVR2A/ACVR2B/BCR/CAMK2D/EGFR/NEK1/PAK3/PRKAA2/PRKCD/PRKCG/MAPK1/MAPK3/MAP2K1/MAP2K3/MAP4K2/DYRK3/DYRK2/RIPK2/MAP3K6/STK17A/BCKDK/STK25/MAST3/TNIK/STK26/CAMK1G/UHMK1/ACVR1C/PNCK/TTBK2/STK32C
GO:0016798 GO:0016798 hydrolase activity, acting on glycosyl bonds 26 -0.0354040 0.2135573 0.3228662 0.1960316 IL1RAP/MAN1A1/OGG1/MANEAL
GO:0005216 GO:0005216 monoatomic ion channel activity 184 -0.0541121 0.2171566 0.3267592 0.1983953 HCN2/GABRA5/GABRB1/GABRG1/GRIK2/KCNC1/KCNC3/KCNC4/KCNJ14/OCA2/OPRM1/SCN1A/SCN1B/SCN3A/TRPC3/GLRA3/KCNAB3/KCNB2/KCNMB4/SCN3B/KCNK12/SLC17A6/KCNT1/STIM2/ANO3/TMEM109/TRPM3/LRRC38/KCNG3/SLC26A11/TMEM150C
GO:0015179 GO:0015179 L-amino acid transmembrane transporter activity 20 0.0585808 0.2187562 0.3276209 0.1989185 SLC25A22
GO:0106310 GO:0106310 protein serine kinase activity 132 0.0607317 0.2461508 0.3669257 0.2227828 BCR/CAMK2D/NEK1/PAK3/PRKAA2/PRKCD/PRKCG/MAPK1/MAPK3/MAP2K1/MAP2K3/MAP4K2/DYRK3/DYRK2/RIPK2/MAP3K6/STK17A/BCKDK/STK25/MAST3/TNIK/STK26/CAMK1G/UHMK1/PNCK/TTBK2/STK32C
GO:0140767 GO:0140767 enzyme-substrate adaptor activity 24 0.0725691 0.2489502 0.3693726 0.2242685 SH3BGRL/KLHL2/FBXL2/FZR1
GO:0005245 GO:0005245 voltage-gated calcium channel activity 25 -0.0545068 0.2527495 0.3716046 0.2256236 OPRM1/CACNA1H/CACNA2D2/CACNG3/CACNG8
GO:0030546 GO:0030546 signaling receptor activator activity 131 -0.0389033 0.2533493 0.3716046 0.2256236 ADM/EGFR/FGF13/GAS6/GDF10/GMFB/GNRH1/IGF1/INHBA/KNG1/PENK/POMC/VEGFA/WNT10B/SEMA7A/FGF18/SEMA4F/CCL27/PDGFC/ERFE/CMTM8/FNDC5
GO:0005249 GO:0005249 voltage-gated potassium channel activity 57 0.0969053 0.2539492 0.3716046 0.2256236 HCN2/KCNA4/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/KCNAB3/KCNB2/KCNG3
GO:0019842 GO:0019842 vitamin binding 52 -0.0527847 0.2567487 0.3739855 0.2270692 CALB1/CRABP1/OGDH/PHYH/RBP4/P4HA2/P3H3/PNPO/SRR/SDSL
GO:0008514 GO:0008514 organic anion transmembrane transporter activity 83 -0.0354804 0.2623475 0.3804039 0.2309662 GRIK2/GRIK3/SLC26A4/SLC6A6/SLC7A4/SLC16A2/SLC16A6/MPC1/SLC17A6/SLC39A8/SLC25A22/SLC4A9/SLC26A11
GO:0022853 GO:0022853 active monoatomic ion transmembrane transporter activity 80 0.0640060 0.2655469 0.3821488 0.2320257 ATP2B4/ATP6V1C1/SLC26A4/SLC30A10/SLC39A10/SLC39A8/SLC25A22/SLC4A9/SLC26A11
GO:0046915 GO:0046915 transition metal ion transmembrane transporter activity 20 0.0411899 0.2659468 0.3821488 0.2320257 SLC25A37/SLC30A10/SLC39A10/SLC39A8
GO:1901681 GO:1901681 sulfur compound binding 89 -0.0338855 0.2721456 0.3893024 0.2363691 DPYSL3/KNG1/MOCS1/PTPRF/SLIT1/SOAT1/VEGFA/ADAMTS5/FSTL1/CHST15/METTL17/PNPLA3/RSPO3/RSPO2
GO:0004175 GO:0004175 endopeptidase activity 103 -0.0364315 0.2787443 0.3969617 0.2410195 C1R/C1S/CTSC/F12/IDE/PCSK5/KLK10/UCHL1/USP13/ADAMTS5/RHBDD2/SPPL3/RHBDL3/ADAMTS19/PRSS56
GO:0061135 GO:0061135 endopeptidase regulator activity 41 -0.0364904 0.2805439 0.3977489 0.2414974 COL7A1/ANOS1/KNG1/SERPINB9/SERPINI1/PRNP/WFDC2/WFDC1/UBE2Z/WFIKKN1
GO:0030276 GO:0030276 clathrin binding 24 0.0494653 0.2853429 0.4027628 0.2445417 TOM1L1/SYT17/SYT2/SCLT1/SYT10
GO:0016922 GO:0016922 nuclear receptor binding 58 0.0282455 0.2891422 0.4063275 0.2467060 PRMT2/NKX3-1/RXRA/SMARCD3/YWHAH/NR4A3/NCOA3/TRIP12/NCOR2/RERG/DNAAF4
GO:0030971 GO:0030971 receptor tyrosine kinase binding 35 -0.0292425 0.2939412 0.4112599 0.2497008 DUSP3/GAS6/GRB14/TIAM1/PITPNM2/ELMO2/FIZ1
GO:0016614 GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 49 -0.0658883 0.2955409 0.4116923 0.2499633 HMGCR/HSD11B1/LDHA/KCNAB3/HIBADH/HSD17B11/DCXR
GO:0015079 GO:0015079 potassium ion transmembrane transporter activity 81 0.0803545 0.2979404 0.4132304 0.2508972 HCN2/GRIK2/GRIK3/KCNA4/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/KCNAB3/KCNB2/KCNMB2/KCNMB4/KCNG3
GO:0008135 GO:0008135 translation factor activity, RNA binding 27 0.0700502 0.3055389 0.4219347 0.2561821 EIF2S1/EIF2S3/EIF1AY/GSPT2/EIF5A2/EIF2A/CPEB2
GO:0030544 GO:0030544 Hsp70 protein binding 24 -0.0849682 0.3109378 0.4274290 0.2595180 CDKN1B/DNAJA1/SNCA/HDAC8
GO:0030170 GO:0030170 pyridoxal phosphate binding 22 -0.0459131 0.3135373 0.4274290 0.2595180 PYGL/PNPO/SRR/SDSL
GO:0070279 GO:0070279 vitamin B6 binding 22 -0.0459131 0.3135373 0.4274290 0.2595180 PYGL/PNPO/SRR/SDSL
GO:0015631 GO:0015631 tubulin binding 137 0.0425610 0.3175365 0.4310389 0.2617098 CETN2/DYNC1I1/FGF13/GAS2/KIF2A/KIF3C/OGG1/PRNP/SNCA/TBCE/ARHGEF7/NISCH/KIF21B/AGTPBP1/HDGFL3/STMN3/TRIM36/RCC2/MAP1LC3B/NAV3/PACRG/TTBK2/JAKMIP1/FAM110C
GO:0030331 GO:0030331 nuclear estrogen receptor binding 20 0.0407471 0.3205359 0.4332667 0.2630625 PRMT2/NKX3-1/DNAAF4
GO:0046873 GO:0046873 metal ion transmembrane transporter activity 181 0.0573697 0.3225355 0.4341301 0.2635866 ATP2B4/HCN2/FKBP1B/GPM6A/GRIK2/GRIK3/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/OPRM1/SCN3A/TRPC3/TUSC3/CACNA1H/KCNAB3/KCNB2/KCNMB2/CACNG3/KCNMB4/TRPV2/SLC30A10/SCN3B/KCNK12/TRPM3/GRIN3A/KCNG3
GO:0051082 GO:0051082 unfolded protein binding 38 -0.0698944 0.3277345 0.4392743 0.2667100 CANX/CLGN/DNAJA1/HSPB2/DNAJC4/HSPB6/SRSF12
GO:0016298 GO:0016298 lipase activity 44 0.0319845 0.3299340 0.4403722 0.2673766 EDNRA/GPLD1/PLCB2/PLCB4/ABHD12/PNPLA3/PLCD4/PLB1
GO:0005085 GO:0005085 guanyl-nucleotide exchange factor activity 106 -0.0221448 0.3517297 0.4675073 0.2838520 BCR/HPS1/MCF2/RASGRF1/RPGR/TIAM1/ARHGEF11/VAV3/RAB3GAP1/IQSEC2/MCF2L/DOCK9/PSD3/THG1L/RCC2/ARFGEF3/DENND1A/ARHGEF28/PLCD4/KNDC1/DENND1B/RASGEF1C
GO:0016616 GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 45 -0.0643311 0.3571286 0.4727138 0.2870131 HMGCR/HSD11B1/LDHA/KCNAB3/HIBADH/HSD17B11/DCXR
GO:0048156 GO:0048156 tau protein binding 20 -0.0633281 0.3653269 0.4815673 0.2923887 PRKAA1/SNCA/BRSK1/TTBK2
GO:1990782 GO:1990782 protein tyrosine kinase binding 47 -0.0252863 0.3675265 0.4824731 0.2929386 DUSP3/GAS6/GRB14/ITGB1/MFAP3/TIAM1/PITPNM2/ELMO2/FIZ1
GO:0005179 GO:0005179 hormone activity 36 -0.0371345 0.3705259 0.4844171 0.2941189 ADM/INHBA/KNG1/PENK/POMC/ERFE/FNDC5
GO:0022804 GO:0022804 active transmembrane transporter activity 142 0.0427638 0.3723255 0.4847830 0.2943411 ATP2B4/ATP6V1C1/NDUFC2/SLC26A4/SLC6A6/SLC16A2/SLC22A5/TAP1/ABCB6/SLC30A10/SLC39A10/SLC39A8/SLC25A23/SLC25A22/SLC4A9/SLC2A12/SLC26A11
GO:0004721 GO:0004721 phosphoprotein phosphatase activity 70 -0.0252976 0.3803239 0.4931843 0.2994420 DUSP3/EYA4/PPEF1/PPP1CC/PPP1R3D/PTPRA/PTPRF/BCKDK/PPP1R3B/PPM1M
GO:0015078 GO:0015078 proton transmembrane transporter activity 43 0.0582571 0.3861228 0.4976948 0.3021807 ATP6V1C1/ATP6V1H/SLC45A4/SLC25A22
GO:0005504 GO:0005504 fatty acid binding 21 -0.0785028 0.3869226 0.4976948 0.3021807 CRABP1/FABP7/PPARD/SCP2
GO:0004620 GO:0004620 phospholipase activity 39 0.0292932 0.4091182 0.5241313 0.3182319 EDNRA/GPLD1/PLCB2/PLCB4/ABHD12/PNPLA3/PLCD4/PLB1
GO:0019902 GO:0019902 phosphatase binding 77 -0.0180656 0.4147171 0.5291790 0.3212966 ANK1/ATP2B4/CTSC/EGFR/PPP1CC/PPP1R3D/SPHK1/DZIP3/FBXL2/PPP1R3F/GRIN3A
GO:0022843 GO:0022843 voltage-gated monoatomic cation channel activity 84 0.0560223 0.4193161 0.5329157 0.3235654 HCN2/KCNA4/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/OPRM1/CACNA1H/KCNAB3/KCNB2/CACNG3/KCNK12/KCNG3
GO:0003823 GO:0003823 antigen binding 20 0.0709302 0.4253149 0.5383947 0.3268920 LAG3/TAP1/SPON2
GO:0005548 GO:0005548 phospholipid transporter activity 24 0.0254142 0.4319136 0.5445867 0.3306516 C2CD2L/PITPNM2/PCTP/ANO3
GO:0016763 GO:0016763 pentosyltransferase activity 25 -0.0190157 0.4365127 0.5482187 0.3328568 MTAP/LARGE1/XYLT1/XYLT2
GO:0030159 GO:0030159 signaling receptor complex adaptor activity 22 -0.0275338 0.4397121 0.5500712 0.3339815 GNB2/GNB3/SORBS1/GNB4/MMS19
GO:0016810 GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 47 0.0169119 0.4497101 0.5603809 0.3402412 CRMP1/DPYSL3/GDA/HDAC9/DPYSL4/NGLY1/HDAC8/NIT2/MBLAC2
GO:0016504 GO:0016504 peptidase activator activity 22 0.0382988 0.4757049 0.5904663 0.3585079 CTSC/NKX3-1/PSME2
GO:0008083 GO:0008083 growth factor activity 43 -0.0335550 0.4905019 0.6064733 0.3682266 FGF13/GDF10/GMFB/INHBA/VEGFA
GO:0051020 GO:0051020 GTPase binding 144 -0.0197708 0.5188962 0.6373836 0.3869942 DAPK3/MEGF9/GNB2/GRIA1/PAK3/TRIP11/USP6NL/DOCK4/GIT2/NCKAP1/RAB3GAP1/RIMS1/GGA2/MYRIP/ANKFY1/RAPGEF6/TBC1D13/FNBP1L/CCDC186/TMEM127/RADIL/RCC2/CDC42SE2/RRAGD/DENND1B/RILPL2
GO:0005244 GO:0005244 voltage-gated monoatomic ion channel activity 94 0.0433434 0.5214957 0.6373836 0.3869942 HCN2/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/OPRM1/CACNA1H/KCNAB3/KCNB2/CACNG3/KCNMB4/KCNK12/GRIN3A/LRRC38/KCNG3
GO:0022832 GO:0022832 voltage-gated channel activity 94 0.0433434 0.5214957 0.6373836 0.3869942 HCN2/KCNA5/KCNC4/KCNG1/KCNJ12/KCNK1/KCNK2/OPRM1/CACNA1H/KCNAB3/KCNB2/CACNG3/KCNMB4/KCNK12/GRIN3A/LRRC38/KCNG3
GO:0046332 GO:0046332 SMAD binding 32 -0.0239137 0.5428914 0.6610014 0.4013340 ACVR1/FKBP1A/SMAD1/SMAD2
GO:0016651 GO:0016651 oxidoreductase activity, acting on NAD(P)H 28 -0.0567335 0.5456909 0.6618836 0.4018696 NDUFC2/DCXR/ENOX1/RNLS/AIFM3
GO:0005543 GO:0005543 phospholipid binding 196 -0.0149102 0.5480904 0.6622759 0.4021078 EPB41/GAP43/GAS6/SNCA/SYT1/RASAL1/DOC2B/DOC2A/BAIAP3/CPNE6/C2CD2L/OSBPL2/TOM1L1/RAB35/NISCH/MCF2L/CPNE7/VPS36/SNX7/RAPGEF6/SYT17/EPN3/LAPTM4B/GRAMD1B/PITPNM2/DENND1A/PCTP/TTPAL/PNPLA3/MAP1LC3B/SYT3/ZFYVE19/ARHGAP33/SYT2/DENND1B/SYT10/UNC13C
GO:0005178 GO:0005178 integrin binding 73 -0.0255683 0.5656869 0.6809589 0.4134514 CXADR/EGFR/IGF1/ITGB1/CXCL12/ICAM5/UTRN/SEMA7A/ADAMTS5/NISCH/ITGA11/TLN2
GO:0140375 GO:0140375 immune receptor activity 37 -0.0522264 0.5782843 0.6935064 0.4210697 CMKLR1/FLT3/GFRA1/IFNAR2/IL1RAP/IL12RB2/IL17RA/IFNLR1
GO:0016655 GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 20 -0.0661059 0.5914817 0.7066766 0.4290662 NDUFA4/NDUFC2/DCXR/AIFM2
GO:0015399 GO:0015399 primary active transmembrane transporter activity 59 0.0438318 0.5940812 0.7071339 0.4293438 ATP2B4/ATP6V1C1/NDUFC2/TAP1/ABCB6
GO:0001786 GO:0001786 phosphatidylserine binding 29 0.0189744 0.5994801 0.7085109 0.4301799 GAP43/GAS6/SYT1/CPNE6/SYT17/SYT2/SYT10
GO:0017046 GO:0017046 peptide hormone binding 20 0.0192025 0.5996801 0.7085109 0.4301799 INHBA/GLP2R
GO:0005267 GO:0005267 potassium channel activity 69 0.0399365 0.6108778 0.7190776 0.4365955 HCN2/GRIK2/GRIK3/KCNA5/KCNC4/KCNG1/KCNJ12/KCNAB3/KCNB2/KCNMB4/KCNK12/KCNG3
GO:0030295 GO:0030295 protein kinase activator activity 47 0.0187463 0.6452709 0.7567700 0.4594809 DDX3X/EGFR/VEGFA/TOM1L1/MOB1B/CCNYL1/CD24
GO:0019905 GO:0019905 syntaxin binding 36 0.0153209 0.6522695 0.7621758 0.4627630 VAMP1/BAIAP3/TMED10/SYT17/SYT2/TXLNB/UNC13C
GO:0019838 GO:0019838 growth factor binding 50 -0.0125865 0.6638672 0.7707818 0.4679883 EGFR/FLT1/FLT3/IGFALS/IGFBP5/KAZALD1/NKD2/ACVR1C
GO:0051087 GO:0051087 protein-folding chaperone binding 53 -0.0275880 0.6644671 0.7707818 0.4679883 CDKN1B/CTSC/DNAJA1/PRNP/SNCA/TBCE/USP13/PDPN/HDAC8/FNIP2/PACRG
GO:0140657 GO:0140657 ATP-dependent activity 176 0.0139705 0.6790642 0.7829481 0.4753752 ATP2B4/ATP6V1C1/DNAH5/ACSL4/KIF2A/KIF3C/MYH7/RECQL/RFC3/TAP1/HSP90B1/UBA3/ABCB6/SMC2/SLC27A2/KIF21B/ATP10D/MYH7B/DDX31/DSCC1/DHX58/PIF1/NAV3/TDRD9/DNAH14/DNAH2/FIGNL2
GO:0042626 GO:0042626 ATPase-coupled transmembrane transporter activity 41 0.0301969 0.6798640 0.7829481 0.4753752 ATP2B4/ATP6V1C1/TAP1/ABCB6
GO:0016755 GO:0016755 aminoacyltransferase activity 167 0.0143472 0.6876625 0.7890803 0.4790984 BIRC3/TRIM27/RING1/RPGR/TGM1/UBE2B/UBE2D2/UBE2E2/UBE2G1/RNF113A/UBA3/ZBED1/TRIP12/DZIP3/NEDD4L/RNF11/KLHL20/TRIM36/PELI1/RNF150/SH3RF1/CCNB1IP1/UBE2O/PJA1/UBE2Z/UHRF2/HECTD2/MED11
GO:0005518 GO:0005518 collagen binding 28 -0.0270854 0.6916617 0.7900506 0.4796875 ITGB1/TGFBI/ITGA11/CCBE1/RELL2
GO:0022836 GO:0022836 gated channel activity 139 -0.0203717 0.6934613 0.7900506 0.4796875 HCN2/FKBP1B/GABRA3/GABRA5/GABRB1/GABRB3/GABRG1/GRIK2/GRIK3/KCNC3/KCNC4/KCNG1/KCNJ14/OPRM1/TRPC3/GLRA3/KCNAB3/KCNB2/KCNMB4/KCNK12/KCNT1/TMEM109/LRRC38/KCNG3/TMEM150C
GO:0120013 GO:0120013 lipid transfer activity 25 0.0153574 0.7018596 0.7953048 0.4828777 C2CD2L/OSBPL2/GRAMD1B/PITPNM2/STARD5
GO:0035254 GO:0035254 glutamate receptor binding 27 -0.0144326 0.7030594 0.7953048 0.4828777 GNAS/PRNP/HOMER3/NECAB2
GO:0005516 GO:0005516 calmodulin binding 104 -0.0123271 0.7056589 0.7954247 0.4829505 ADD1/ATP2B2/ATP2B4/EGFR/EPB41/MARCKS/MYH7/PCNT/PCP4/PDE1A/SNTB1/SYT1/SPHK1/FBXL2/CAMK1G/ITPKC/PNCK/UNC13C
GO:0015297 GO:0015297 antiporter activity 39 -0.0068023 0.7082583 0.7955437 0.4830227 SLC26A4/SLC9A5/SLC30A10/SLC17A6/SLC25A23/SLC4A9/SLC26A11
GO:0017080 GO:0017080 sodium channel regulator activity 22 -0.0201764 0.7150570 0.8003620 0.4859482 ATP2B4/FGF13/FXYD6/SCN3B/SCLT1
GO:0061134 GO:0061134 peptidase regulator activity 55 0.0109262 0.7254549 0.8091612 0.4912908 CTSC/ANOS1/KNG1/NKX3-1/SERPINB9/SERPINI1/PRNP/WFDC2/WFDC1/UBE2Z
GO:0005261 GO:0005261 monoatomic cation channel activity 144 0.0175413 0.7388522 0.8210393 0.4985026 HCN2/FKBP1B/GPM6A/GRIK2/GRIK3/KCNA5/KCNC4/KCNG1/KCNJ12/OPRM1/SCN3A/TRPC3/KCNAB3/KCNB2/KCNMB4/SCN3B/KCNK12/TRPM3/GRIN3A/LRRC38/KCNG3
GO:0051287 GO:0051287 NAD binding 26 -0.0155652 0.7412517 0.8210393 0.4985026 ALDH1A3/HADH/HIBADH/RNLS
GO:0004197 GO:0004197 cysteine-type endopeptidase activity 34 0.0097224 0.7488502 0.8265855 0.5018701 CTSC/CTSO/UCHL1/USP13
GO:0061630 GO:0061630 ubiquitin protein ligase activity 117 -0.0106526 0.7538492 0.8292342 0.5034783 BIRC3/TRIM27/RING1/RPGR/RNF113A/TRIP12/DZIP3/NEDD4L/RNF11/PELI1/RNF150/SH3RF1/CCNB1IP1/UBE2O/PJA1/LONRF3/UHRF2/HECTD2/MED11
GO:0031267 GO:0031267 small GTPase binding 127 -0.0104864 0.7646471 0.8326821 0.5055717 DAPK3/DIAPH2/MEGF9/GRIA1/PAK3/TRIP11/USP6NL/DOCK4/GIT2/ABI2/NCKAP1/RAB3GAP1/RIMS1/GGA2/MYRIP/ANKFY1/RAPGEF6/TBC1D13/CCDC186/TMEM127/BRK1/RCC2/CDC42SE2/DENND1B/RILPL2
GO:0009055 GO:0009055 electron transfer activity 42 -0.0296718 0.7652470 0.8326821 0.5055717 COX7A1/MAOB/NDUFC2/SDHD/P4HA2/HAAO/AIFM2
GO:0045182 GO:0045182 translation regulator activity 45 0.0131264 0.7660468 0.8326821 0.5055717 EIF2S3/IGF2BP3/GSPT2/EIF5A2/CELF4/EIF2A/DAPL1/CPEB2/NANOS1
GO:0005201 GO:0005201 extracellular matrix structural constituent 53 -0.0077437 0.7714457 0.8326821 0.5055717 ACAN/COL7A1/COL12A1/ANOS1/LAMA3/LAMA4/TGFBI/THSD4/COL21A1/LAMA1
GO:0004866 GO:0004866 endopeptidase inhibitor activity 33 -0.0073221 0.7726455 0.8326821 0.5055717 ANOS1/KNG1/SERPINB9/SERPINI1/PRNP/WFDC2/WFDC1/UBE2Z
GO:0030414 GO:0030414 peptidase inhibitor activity 33 -0.0073221 0.7726455 0.8326821 0.5055717 ANOS1/KNG1/SERPINB9/SERPINI1/PRNP/WFDC2/WFDC1/UBE2Z
GO:0032182 GO:0032182 ubiquitin-like protein binding 45 -0.0089558 0.7960408 0.8550068 0.5191264 UCHL1/UCHL3/USP13/TOM1L1/VPS36/DCUN1D2/NSFL1C/OTUB2
GO:0016791 GO:0016791 phosphatase activity 104 0.0058036 0.7998400 0.8562046 0.5198536 DUSP3/EYA4/PPEF1/PPP1CC/PPP1R3D/PTPRA/PTPRF/PUDP/PLPP1/PLPPR4/BCKDK/INPP5F/NT5DC3/NT5M/PLPPR2/PLPPR3/PPM1M
GO:0019787 GO:0019787 ubiquitin-like protein transferase activity 165 0.0087951 0.8046391 0.8584611 0.5212237 BIRC3/TRIM27/RING1/RPGR/UBE2B/UBE2D2/UBE2E2/UBE2G1/RNF113A/UBA3/ZBED1/TRIP12/DZIP3/NEDD4L/RNF11/KLHL20/TRIM36/PELI1/RNF150/SH3RF1/CCNB1IP1/UBE2O/PJA1/UBE2Z/UHRF2/HECTD2/MED11
GO:0061659 GO:0061659 ubiquitin-like protein ligase activity 124 -0.0081285 0.8136373 0.8651676 0.5252956 BIRC3/TRIM27/RING1/RPGR/UBE2D2/RNF113A/ZBED1/TRIP12/DZIP3/NEDD4L/RNF11/PELI1/RNF150/SH3RF1/CCNB1IP1/UBE2O/PJA1/LONRF3/RNF157/UHRF2/HECTD2/MED11
GO:0016765 GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 20 -0.0121253 0.8192362 0.8655633 0.5255359 GSTT1/HMBS/NUS1
GO:0030145 GO:0030145 manganese ion binding 28 0.0053554 0.8194361 0.8655633 0.5255359 ADCY2/PPEF1/DYRK2/LARGE1/PPM1M
GO:0019829 GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity 28 -0.0195224 0.8252350 0.8688117 0.5275082 ATP2B2/ATP2B4/ATP6V1C1
GO:0031593 GO:0031593 polyubiquitin modification-dependent protein binding 22 -0.0111566 0.8292342 0.8701503 0.5283209 BABAM2/DZIP3/ZBTB1
GO:0004896 GO:0004896 cytokine receptor activity 29 -0.0151918 0.8386323 0.8771269 0.5325568 FLT3/IFNAR2/IL1RAP/IL12RB2/IL17RA/IFNLR1
GO:0008233 GO:0008233 peptidase activity 164 -0.0062599 0.8596281 0.8961482 0.5441058 C1R/C1S/CTSC/CPE/F12/IDE/CHMP1A/PCSK5/RELN/KLK10/UCHL1/UCHL3/USP13/NAALAD2/ADAMTS5/CFAP44/RHBDD2/DPP10/SCPEP1/OTUB2/ERMP1/MINDY3/USP45/SPPL3/TRABD2A/RHBDL3/ADAMTS19/PRSS56
GO:0004722 GO:0004722 protein serine/threonine phosphatase activity 38 -0.0082509 0.8648270 0.8986313 0.5456135 DUSP3/PPEF1/PPP1CC/PPP1R3D/BCKDK/PPM1M
GO:0004842 GO:0004842 ubiquitin-protein transferase activity 151 -0.0055849 0.8722256 0.9033765 0.5484945 BIRC3/TRIM27/RING1/RPGR/UBE2B/UBE2D2/UBE2E2/UBE2G1/RNF113A/TRIP12/DZIP3/NEDD4L/RNF11/KLHL20/TRIM36/PELI1/RNF150/SH3RF1/CCNB1IP1/UBE2O/PJA1/UBE2Z/LONRF3/UHRF2/HECTD2/MED11
GO:0008237 GO:0008237 metallopeptidase activity 49 -0.0091120 0.8834233 0.9092769 0.5520770 CPE/IDE/CHMP1A/KLK7/NAALAD2/ADAMTS5/ERMP1/TRABD2A/ADAMTS19
GO:0004222 GO:0004222 metalloendopeptidase activity 31 -0.0087407 0.8836233 0.9092769 0.5520770 IDE/KLK7/ADAMTS5/TRABD2A/ADAMTS19
GO:0019209 GO:0019209 kinase activator activity 50 0.0053237 0.8888222 0.9116858 0.5535397 DDX3X/EGFR/VEGFA/TOM1L1/MOB1B/CCNYL1/CD24
GO:0099094 GO:0099094 ligand-gated monoatomic cation channel activity 52 0.0078788 0.8986203 0.9187816 0.5578479 HCN2/FKBP1B/GRIK2/GRIK3/KCNJ12/TRPC3/KCNMB4/KCNT1
GO:0005262 GO:0005262 calcium channel activity 49 0.0057379 0.9034193 0.9207373 0.5590353 FKBP1B/GPM6A/OPRM1/TRPC3/CACNA1H/CACNG3/TRPV2/STIM2/TRPM3/GRIN3A
GO:1901981 GO:1901981 phosphatidylinositol phosphate binding 73 -0.0024552 0.9230154 0.9377131 0.5693424 GAP43/SYT1/OSBPL2/RAB35/VPS36/LAPTM4B/DENND1A/TTPAL/ZFYVE19/DENND1B/SYT10
GO:0005126 GO:0005126 cytokine receptor binding 59 0.0022422 0.9392122 0.9511387 0.5774939 FKBP1A/IL1RAP/LTB/SMAD2/CXCL12/VEGFA/BABAM2/CCL27/RASL11B/IL34
GO:0019903 GO:0019903 protein phosphatase binding 60 -0.0017380 0.9432114 0.9521659 0.5781176 ANK1/ATP2B4/EGFR/PPP1CC/PPP1R3D/SPHK1/FBXL2/PPP1R3F/GRIN3A
GO:0015085 GO:0015085 calcium ion transmembrane transporter activity 59 -0.0026411 0.9534093 0.9594245 0.5825247 ATP2B4/FKBP1B/GPM6A/OPRM1/TRPC3/SLC30A10/STIM2/TRPM3/GRIN3A
GO:0035091 GO:0035091 phosphatidylinositol binding 112 0.0001203 0.9962008 0.9993335 0.6067558 EPB41/GAP43/SYT1/C2CD2L/OSBPL2/TOM1L1/RAB35/NISCH/MCF2L/VPS36/SNX7/LAPTM4B/PITPNM2/DENND1A/TTPAL/ZFYVE19/ARHGAP33/DENND1B/SYT10
GO:0031072 GO:0031072 heat shock protein binding 44 0.0000137 1.0000000 1.0000000 0.6071605 FKBP5/DNAJA1/SNCA/TFAM/HDAC8/PACRG