Combine Results from Saved RDS Files
job_cat.RdThis function combines results from multiple saved RDS files into a single data frame or list, saves the combined results as an RDS file (optional), and checks for missing files.
Usage
job_cat(
input_dir,
output_dir = NULL,
n_rds = NULL,
save_name = NULL,
file_pattern = "res_job_%d.rds",
delete_originals = TRUE,
preserve_attributes = FALSE,
result_prefix = NULL,
compress = c("xz", "gzip", "bzip2")
)Arguments
- input_dir
A character string specifying the directory containing the RDS files to be combined.
- output_dir
A character string specifying the directory where the RDS files are stored.
- n_rds
An integer specifying the expected number of RDS files. If provided, the function will check if any files are missing.
- save_name
A character string specifying the name of the output RDS file for the combined results. If not provided, it will default to the name of the output_dir. Must end with .rds.
- file_pattern
A character string specifying the pattern of the RDS files to be combined. Default is "res_job_%d.rds".
- delete_originals
A logical indicating whether to delete the original RDS files after combining. Default is TRUE.
- preserve_attributes
A logical indicating whether to preserve and update attributes specific to brainscore output. Default is FALSE.
- result_prefix
A character string specifying the prefix for naming the combined results. Default is "null_".
- compress
A character string specifying the compression method to use when saving the combined results. For an efficient download from the HPC, default is set as "xz".